Sequence Similarity Clusters for the Entities in PDB 1GMC

Entity #1 | Chains: E
GAMMA-CHYMOTRYPSIN A protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
GAMMA-CHYMOTRYPSIN A protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 38 840
95 % 27 38 1140
90 % 27 38 1164
70 % 27 40 1158
50 % 27 40 1196
40 % 28 42 1163
30 % 30 50 1001
Entity #3 | Chains: G
GAMMA-CHYMOTRYPSIN A protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 38 841
95 % 27 38 1141 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 27 38 1166
70 % 27 40 1161
50 % 29 43 1129
40 % 31 52 991
30 % 31 52 969
Entity #4 | Chains: B
PRO GLY ALA TYR PEPTIDE protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures