Sequence Similarity Clusters for the Entities in PDB 1GM9

Entity #1 | Chains: A
PENICILLIN G ACYLASE ALPHA SUBUNIT protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 20 2529
95 % 2 21 2959 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 21 3007
70 % 2 21 2979
50 % 2 22 2808
40 % 2 22 2763
30 % 2 22 2587
Entity #2 | Chains: B
PENICILLIN G ACYLASE BETA SUBUNIT protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 10086
95 % 5 24 2412 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 5 24 2476
70 % 5 26 1756
50 % 5 27 1742
40 % 5 29 1644
30 % 5 29 1610

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.