Sequence Similarity Clusters for the Entities in PDB 1GM8

Entity #1 | Chains: A
PENICILLIN G ACYLASE ALPHA SUBUNIT protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 20 2393
95 % 4 21 2831
90 % 4 21 2880
70 % 4 21 2857
50 % 4 22 2697
40 % 4 22 2663
30 % 4 22 2484
Entity #2 | Chains: B
PENICILLIN G ACYLASE BETA SUBUNIT protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 24223
95 % 7 24 2293 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 7 24 2361
70 % 7 26 1671
50 % 7 27 1669
40 % 7 29 1580
30 % 7 29 1552

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.