Sequence Similarity Clusters for the Entities in PDB 1GM7

Entity #1 | Chains: A
PENICILLIN G ACYLASE ALPHA SUBUNIT protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 20 2446
95 % 1 21 2875 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 21 2922
70 % 1 21 2899
50 % 1 22 2736
40 % 1 22 2694
30 % 1 22 2524
Entity #2 | Chains: B
PENICILLIN G ACYLASE BETA SUBUNIT protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 24574
95 % 3 24 2346
90 % 3 24 2410
70 % 3 26 1705
50 % 3 27 1693
40 % 3 29 1597
30 % 3 29 1571

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.