Sequence Similarity Clusters for the Entities in PDB 1GM7

Entity #1 | Chains: A
PENICILLIN G ACYLASE ALPHA SUBUNIT protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 16 3957
95 % 1 21 3090
90 % 1 21 3146
70 % 1 21 3087
50 % 1 22 2906
40 % 1 22 2829
30 % 1 22 2614
Entity #2 | Chains: B
PENICILLIN G ACYLASE BETA SUBUNIT protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 20 2967
95 % 3 24 2606 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 3 24 2674
70 % 3 26 1886
50 % 3 27 1847
40 % 3 29 1719
30 % 3 29 1690

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures