Sequence Similarity Clusters for the Entities in PDB 1GLI

Entity #1 | Chains: A,C
DEOXYHEMOGLOBIN protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45566
95 % 246 250 19 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 247 251 20
70 % 325 332 15
50 % 739 754 4
40 % 744 759 8
30 % 1196 1218 8
Entity #2 | Chains: B,D
DEOXYHEMOGLOBIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 166 169 51
95 % 247 250 18 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 252 255 19
70 % 339 346 14
50 % 740 754 4
40 % 745 759 8
30 % 1197 1218 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures