Sequence Similarity Clusters for the Entities in PDB 1GLI

Entity #1 | Chains: A,C
DEOXYHEMOGLOBIN protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37354
95 % 260 265 16 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 260 265 18
70 % 325 332 17
50 % 740 755 4
40 % 745 760 7
30 % 1277 1299 6
Entity #2 | Chains: B,D
DEOXYHEMOGLOBIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 212 215 41
95 % 248 251 19 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 253 256 21
70 % 340 347 14
50 % 741 755 4
40 % 746 760 7
30 % 1278 1299 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures