Sequence Similarity Clusters for the Entities in PDB 1GLE

Entity #1 | Chains: F
GLUCOSE-SPECIFIC PROTEIN IIIGlc protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 3498
95 % 7 12 4280 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 7 12 4310
70 % 8 13 3264
50 % 8 13 3178
40 % 10 16 2704
30 % 10 16 2543
Entity #2 | Chains: G
GLYCEROL KINASE protein, length: 501 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 4332
95 % 7 13 1820 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 7 13 1857
70 % 7 13 1887
50 % 16 27 823
40 % 23 39 551
30 % 23 39 545

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures