Sequence Similarity Clusters for the Entities in PDB 1GLD

Entity #1 | Chains: F
GLUCOSE-SPECIFIC PROTEIN IIIGlc protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 12 3404
95 % 5 12 4177 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 5 12 4205
70 % 6 13 3175
50 % 6 13 3100
40 % 8 16 2637
30 % 8 16 2482
Entity #2 | Chains: G
GLYCEROL KINASE protein, length: 501 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 4216
95 % 5 13 1772 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 5 13 1807
70 % 5 13 1833
50 % 13 27 812
40 % 19 39 536
30 % 19 39 535

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.