Sequence Similarity Clusters for the Entities in PDB 1GL4

Entity #1 | Chains: A
NIDOGEN-1 protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 36023
95 % 1 2 28129 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 27165
70 % 1 2 24614
50 % 1 2 21146
40 % 1 2 18653
30 % 1 2 15849
Entity #2 | Chains: B
BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE PROTEOGLYCAN CORE PROTEIN protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67875
95 % 1 1 46813
90 % 1 1 44444
70 % 1 1 39106
50 % 1 1 33416
40 % 1 1 29487
30 % 1 1 24899

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.