Sequence Similarity Clusters for the Entities in PDB 1GL4

Entity #1 | Chains: A
NIDOGEN-1 protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 38431
95 % 1 2 29945 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 28880
70 % 1 2 26036
50 % 1 2 22283
40 % 1 2 19645
30 % 1 2 16690
Entity #2 | Chains: B
BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE PROTEOGLYCAN CORE PROTEIN protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72046
95 % 1 1 49652
90 % 1 1 47028
70 % 1 1 41184
50 % 1 1 35086
40 % 1 1 30931
30 % 1 1 26116

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures