Sequence Similarity Clusters for the Entities in PDB 1GL4

Entity #1 | Chains: A
NIDOGEN-1 protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 37968
95 % 1 2 29588 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 28543
70 % 1 2 25746
50 % 1 2 22047
40 % 1 2 19443
30 % 1 2 16513
Entity #2 | Chains: B
BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE PROTEOGLYCAN CORE PROTEIN protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71249
95 % 1 1 49119
90 % 1 1 46541
70 % 1 1 40772
50 % 1 1 34739
40 % 1 1 30623
30 % 1 1 25854

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures