Sequence Similarity Clusters for the Entities in PDB 1GL4

Entity #1 | Chains: A
NIDOGEN-1 protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 37163
95 % 1 2 29006 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 28000
70 % 1 2 25289
50 % 1 2 21666
40 % 1 2 19117
30 % 1 2 16248
Entity #2 | Chains: B
BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE PROTEOGLYCAN CORE PROTEIN protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69918
95 % 1 1 48279
90 % 1 1 45787
70 % 1 1 40142
50 % 1 1 34227
40 % 1 1 30185
30 % 1 1 25497

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.