Sequence Similarity Clusters for the Entities in PDB 1GKO

Entity #1 | Chains: A,B,C,D
TRANSTHYRETIN protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 1410
95 % 260 281 11 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 0.8
PDBFlex
90 % 260 281 12
70 % 262 287 16
50 % 266 291 20
40 % 266 291 28
30 % 274 303 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.