Sequence Similarity Clusters for the Entities in PDB 1GKK

Entity #1 | Chains: A,B
ENDO-1,4-BETA-XYLANASE Y protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 3506
95 % 5 10 3540 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 5 10 3616
70 % 5 10 3556
50 % 5 10 3481
40 % 5 10 3337
30 % 5 10 3081

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1WB4 1 A, B ENDO-1,4-BETA-XYLANASE Y FERULOYL ESTERASE DOMAIN, RESIDUES 792-1077 1515 3.2.1.8 | Details
2 1WB6 1 A, B ENDO-1,4-BETA-XYLANASE Y FERULOYL ESTERASE DOMAIN, RESIDUES 792-1077 1515 3.2.1.8 | Details
3 1WB5 1 A, B ENDO-1,4-BETA-XYLANASE Y FERULOYL ESTERASE DOMAIN, RESIDUES 792-1077 1515 3.2.1.8 | Details
4 1GKL 1 A, B ENDO-1,4-BETA-XYLANASE Y FERULOYL ESTERASE DOMAIN 1515 3.2.1.8 | Details
5 1GKK 1 A, B ENDO-1,4-BETA-XYLANASE Y FERULOYL ESTERASE DOMAIN RESIDUES 792-1077 1515 3.2.1.8 | Details
6 6FJ4 1 A Endo-1,4-beta-xylanase Y 1515 3.2.1.8 | Details
7 4H35 1 A, B Endo-1,4-beta-xylanase Y feruloyl esterase domain (UNP residues 792-1077) 1515 3.2.1.8 | Details
8 4BAG 1 A, B ENDO-1,4-BETA-XYLANASE Y 1515 3.2.1.8 | Details
9 5FXM 1 A ENDO-1,4-BETA-XYLANASE Y RESIDUES 792-1077 1515 3.2.1.8 | Details
10 3ZI7 1 A, B ENDO-1,4-BETA-XYLANASE Y 1515 3.2.1.8 | Details