Sequence Similarity Clusters for the Entities in PDB 1GKK

Entity #1 | Chains: A,B
ENDO-1,4-BETA-XYLANASE Y protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 3742
95 % 5 10 3744 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 5 10 3805
70 % 5 10 3739
50 % 5 10 3637
40 % 5 10 3478
30 % 5 10 3202

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1WB4 1 A, B ENDO-1,4-BETA-XYLANASE Y FERULOYL ESTERASE DOMAIN, RESIDUES 792-1077 1515 3.2.1.8 | Details
2 1WB6 1 A, B ENDO-1,4-BETA-XYLANASE Y FERULOYL ESTERASE DOMAIN, RESIDUES 792-1077 1515 3.2.1.8 | Details
3 1WB5 1 A, B ENDO-1,4-BETA-XYLANASE Y FERULOYL ESTERASE DOMAIN, RESIDUES 792-1077 1515 3.2.1.8 | Details
4 1GKL 1 A, B ENDO-1,4-BETA-XYLANASE Y FERULOYL ESTERASE DOMAIN 1515 3.2.1.8 | Details
5 1GKK 1 A, B ENDO-1,4-BETA-XYLANASE Y FERULOYL ESTERASE DOMAIN RESIDUES 792-1077 1515 3.2.1.8 | Details
6 6FJ4 1 A Endo-1,4-beta-xylanase Y 1515 3.2.1.8 | Details
7 4H35 1 A, B Endo-1,4-beta-xylanase Y feruloyl esterase domain (UNP residues 792-1077) 1515 3.2.1.8 | Details
8 4BAG 1 A, B ENDO-1,4-BETA-XYLANASE Y 1515 3.2.1.8 | Details
9 5FXM 1 A ENDO-1,4-BETA-XYLANASE Y RESIDUES 792-1077 1515 3.2.1.8 | Details
10 3ZI7 1 A, B ENDO-1,4-BETA-XYLANASE Y 1515 3.2.1.8 | Details