Sequence Similarity Clusters for the Entities in PDB 1GKK

Entity #1 | Chains: A,B
ENDO-1,4-BETA-XYLANASE Y protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 7159
95 % 5 9 3742 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 5 9 3800
70 % 5 9 3743
50 % 5 9 3631
40 % 5 9 3506
30 % 5 9 3272

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures