Sequence Similarity Clusters for the Entities in PDB 1GKI

Entity #1 | Chains: A,B,D,E,F,G
CONJUGAL TRANSFER PROTEIN TRWB protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 1109
95 % 4 5 1490 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 4 5 1523
70 % 4 5 1532
50 % 4 5 1585
40 % 4 5 1602
30 % 4 5 1573

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures