Sequence Similarity Clusters for the Entities in PDB 1GKF

Entity #1 | Chains: A
PENICILLIN G ACYLASE ALPHA SUBUNIT protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 27009
95 % 2 3 22596
90 % 2 3 21941
70 % 2 3 20114
50 % 2 3 17442
40 % 2 3 15561
30 % 2 3 13314
Entity #2 | Chains: B
PENICILLIN G ACYLASE BETA SUBUNIT protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 25195
95 % 2 24 2391 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 2 24 2454
70 % 2 26 1750
50 % 2 27 1734
40 % 2 29 1636
30 % 2 29 1607

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.