Sequence Similarity Clusters for the Entities in PDB 1GKF

Entity #1 | Chains: A
PENICILLIN G ACYLASE ALPHA SUBUNIT protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 29219
95 % 2 3 25532 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 2 3 24650
70 % 2 3 22345
50 % 2 3 19190
40 % 2 3 16943
30 % 2 3 14198
Entity #2 | Chains: B
PENICILLIN G ACYLASE BETA SUBUNIT protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 20 2973
95 % 2 24 2620 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 2 24 2692
70 % 2 26 1900
50 % 2 27 1859
40 % 2 29 1731
30 % 2 29 1698

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures