Sequence Similarity Clusters for the Entities in PDB 1GKF

Entity #1 | Chains: A
PENICILLIN G ACYLASE ALPHA SUBUNIT protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 26194
95 % 2 3 21910
90 % 2 3 21287
70 % 2 3 19592
50 % 2 3 17014
40 % 2 3 15182
30 % 2 3 12991
Entity #2 | Chains: B
PENICILLIN G ACYLASE BETA SUBUNIT protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 24427
95 % 2 24 2323 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 2 24 2388
70 % 2 26 1691
50 % 2 27 1678
40 % 2 29 1585
30 % 2 29 1559

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.