Sequence Similarity Clusters for the Entities in PDB 1GKE

Entity #1 | Chains: A,B,C,D
TRANSTHYRETIN protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 3370
95 % 4 5 2535 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 4 5 2586
70 % 273 288 15
50 % 277 292 20
40 % 277 292 29
30 % 286 304 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.