Sequence Similarity Clusters for the Entities in PDB 1GKE

Entity #1 | Chains: A,B,C,D
TRANSTHYRETIN protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 3486
95 % 4 5 2609 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 4 5 2663
70 % 282 297 14
50 % 286 301 20
40 % 286 301 32
30 % 295 313 42

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures