Sequence Similarity Clusters for the Entities in PDB 1GKE

Entity #1 | Chains: A,B,C,D
TRANSTHYRETIN protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 4066
95 % 4 5 2711 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 4 5 2778
70 % 285 301 16
50 % 289 305 23
40 % 289 305 36
30 % 298 317 51

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures