Sequence Similarity Clusters for the Entities in PDB 1GKD

Entity #1 | Chains: A,B
92 KDA TYPE IV COLLAGENASE protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 2537
95 % 14 18 1524 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 0.8
PDBFlex
90 % 14 18 1556
70 % 14 18 1554
50 % 146 232 97
40 % 149 236 118
30 % 149 236 129

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.