Sequence Similarity Clusters for the Entities in PDB 1GKD

Entity #1 | Chains: A,B
92 KDA TYPE IV COLLAGENASE protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25068
95 % 15 19 1507 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 0.9
PDBFlex
90 % 15 19 1530
70 % 15 19 1545
50 % 151 237 104
40 % 154 241 126
30 % 154 241 137

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures