Sequence Similarity Clusters for the Entities in PDB 1GKC

Entity #1 | Chains: A,B
92 KDA TYPE IV COLLAGENASE protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41827
95 % 16 18 1442 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 0.9
PDBFlex
90 % 16 18 1469
70 % 16 18 1489
50 % 162 225 97
40 % 165 229 118
30 % 165 229 129

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.