Sequence Similarity Clusters for the Entities in PDB 1GKA

Entity #1 | Chains: A
CRUSTACYANIN A1 SUBUNIT protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15874
95 % 8 8 4555 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 8 8 4575
70 % 8 8 4495
50 % 8 8 4315
40 % 8 8 4119
30 % 8 9 3611
Entity #2 | Chains: B
CRUSTACYANIN A2 SUBUNIT protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64104
95 % 1 1 44616
90 % 1 1 42319
70 % 1 1 37189
50 % 1 1 31658
40 % 1 1 27915
30 % 9 9 3611

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures