Sequence Similarity Clusters for the Entities in PDB 1GKA

Entity #1 | Chains: A
CRUSTACYANIN A1 SUBUNIT protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 16946
95 % 8 8 4744 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 8 8 4775
70 % 8 8 4660
50 % 8 8 4470
40 % 8 8 4218
30 % 8 9 3631
Entity #2 | Chains: B
CRUSTACYANIN A2 SUBUNIT protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64748
95 % 1 1 46905
90 % 1 1 44568
70 % 1 1 39186
50 % 1 1 33245
40 % 1 1 29133
30 % 9 9 3631

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures