Sequence Similarity Clusters for the Entities in PDB 1GKA

Entity #1 | Chains: A
CRUSTACYANIN A1 SUBUNIT protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15601
95 % 8 8 4480 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 8 8 4507
70 % 8 8 4430
50 % 8 8 4257
40 % 8 8 4065
30 % 8 9 3567
Entity #2 | Chains: B
CRUSTACYANIN A2 SUBUNIT protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63223
95 % 1 1 44055
90 % 1 1 41807
70 % 1 1 36756
50 % 1 1 31303
40 % 1 1 27608
30 % 9 9 3567

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures