Sequence Similarity Clusters for the Entities in PDB 1GK9

Entity #1 | Chains: A
PENICILLIN G ACYLASE ALPHA SUBUNIT protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27640
95 % 1 3 23083 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 3 22394
70 % 1 3 20535
50 % 1 3 17785
40 % 1 3 15853
30 % 1 3 13560
Entity #2 | Chains: B
PENICILLIN G ACYLASE BETA SUBUNIT protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10287
95 % 1 24 2467 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 1 24 2532
70 % 1 26 1799
50 % 1 27 1782
40 % 1 29 1680
30 % 1 29 1652

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures