Sequence Similarity Clusters for the Entities in PDB 1GK8

Entity #1 | Chains: A,C,E,G
RIBULOSE-1,5 BISPHOSPHATE CARBOXYLASE LARGE CHAIN protein, length: 475 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 1090
95 % 1 13 348 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.2
PDBFlex
90 % 2 34 168
70 % 2 41 165
50 % 2 48 177
40 % 2 57 150
30 % 2 87 116
Entity #2 | Chains: I,K,M,O
RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 630
95 % 1 11 436 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 1 11 469
70 % 1 13 410
50 % 2 33 241
40 % 2 38 221
30 % 2 38 231

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.