Sequence Similarity Clusters for the Entities in PDB 1GK4

Entity #1 | Chains: A,B,C,D,E,F
VIMENTIN protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 14635
95 % 1 1 13846 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.7
PDBFlex
90 % 1 1 13616
70 % 1 1 12782
50 % 1 1 11398
40 % 1 1 10325
30 % 1 2 7648

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures