Sequence Similarity Clusters for the Entities in PDB 1GK1

Entity #1 | Chains: A,C
CEPHALOSPORIN ACYLASE protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 12311
95 % 6 13 4303 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 6 13 4352
70 % 6 13 4251
50 % 6 13 4101
40 % 6 13 3788
30 % 6 13 3461
Entity #2 | Chains: B,D
CEPHALOSPORIN ACYLASE protein, length: 522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 6620
95 % 6 13 4258 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 6 13 4302
70 % 6 13 4207
50 % 6 13 4064
40 % 6 13 3848
30 % 6 13 3520

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures