Sequence Similarity Clusters for the Entities in PDB 1GK1

Entity #1 | Chains: A,C
CEPHALOSPORIN ACYLASE protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 10580
95 % 6 13 4178 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 6 13 4206
70 % 6 13 4142
50 % 6 13 3987
40 % 6 13 3816
30 % 6 13 3558
Entity #2 | Chains: B,D
CEPHALOSPORIN ACYLASE protein, length: 522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 7750
95 % 6 13 3881 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 6 13 3920
70 % 6 13 3879
50 % 6 13 3775
40 % 6 13 3627
30 % 6 13 3392

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.