Sequence Similarity Clusters for the Entities in PDB 1GK0

Entity #1 | Chains: A,C
CEPHALOSPORIN ACYLASE protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 10635
95 % 12 13 4203
90 % 12 13 4235
70 % 12 13 4167
50 % 12 13 4007
40 % 12 13 3836
30 % 12 13 3575
Entity #2 | Chains: B,D
CEPHALOSPORIN ACYLASE protein, length: 522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 7794
95 % 12 13 3906 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 12 13 3949
70 % 12 13 3905
50 % 12 13 3795
40 % 12 13 3647
30 % 12 13 3409

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures