Sequence Similarity Clusters for the Entities in PDB 1GK0

Entity #1 | Chains: A,C
CEPHALOSPORIN ACYLASE protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 10491
95 % 12 13 4139 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 12 13 4168
70 % 12 13 4114
50 % 12 13 3966
40 % 12 13 3797
30 % 12 13 3536
Entity #2 | Chains: B,D
CEPHALOSPORIN ACYLASE protein, length: 522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 7680
95 % 12 13 3844 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 12 13 3882
70 % 12 13 3851
50 % 12 13 3756
40 % 12 13 3609
30 % 12 13 3371

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.