Sequence Similarity Clusters for the Entities in PDB 1GJI

Entity #1 | Chains: C
IL-2 CD28RE DNA dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
IL-2 CD28RE DNA dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
C-REL PROTO-ONCOGENE PROTEIN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33186
95 % 1 1 28684 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 27559
70 % 1 1 24814
50 % 8 14 2499
40 % 13 27 1299
30 % 13 27 1296

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures