Sequence Similarity Clusters for the Entities in PDB 1GJI

Entity #1 | Chains: C
IL-2 CD28RE DNA dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
IL-2 CD28RE DNA dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
C-REL PROTO-ONCOGENE PROTEIN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36597
95 % 1 1 28530 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 27550
70 % 1 1 24952
50 % 7 13 2715
40 % 12 25 1333
30 % 12 25 1312

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.