Sequence Similarity Clusters for the Entities in PDB 1GJD

Entity #1 | Chains: A
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 20 2187
95 % 6 20 2835
90 % 6 20 2877
70 % 6 20 2847
50 % 6 20 2808
40 % 6 20 2763
30 % 6 20 2586
Entity #2 | Chains: B
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 15 3561
95 % 28 112 304
90 % 28 112 320
70 % 28 117 340
50 % 28 117 399
40 % 28 128 364
30 % 639 1833 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.