Sequence Similarity Clusters for the Entities in PDB 1GJC

Entity #1 | Chains: A
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 20 2150
95 % 9 20 2796
90 % 9 20 2839
70 % 9 20 2807
50 % 9 20 2773
40 % 9 20 2731
30 % 9 20 2551
Entity #2 | Chains: B
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 15 3495
95 % 33 111 303 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.6
PDBFlex
90 % 33 111 318
70 % 33 116 332
50 % 33 116 395
40 % 33 127 354
30 % 728 1827 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.