Sequence Similarity Clusters for the Entities in PDB 1GJA

Entity #1 | Chains: A
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 20 2251
95 % 2 20 2899
90 % 2 20 2940
70 % 2 20 2903
50 % 2 20 2857
40 % 2 20 2811
30 % 2 20 2631
Entity #2 | Chains: B
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 15 3646
95 % 13 112 316 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.6
PDBFlex
90 % 13 112 332
70 % 13 117 351
50 % 13 117 407
40 % 13 128 372
30 % 377 1848 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.