Sequence Similarity Clusters for the Entities in PDB 1GJ9

Entity #1 | Chains: A
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 20 2332
95 % 10 20 2991
90 % 10 20 3031
70 % 10 20 2995
50 % 10 20 2946
40 % 10 20 2891
30 % 10 20 2707
Entity #2 | Chains: B
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 15 3781
95 % 34 112 326
90 % 34 112 344
70 % 34 117 370
50 % 34 117 430
40 % 763 1863 4
30 % 767 1885 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures