Sequence Similarity Clusters for the Entities in PDB 1GJ9

Entity #1 | Chains: A
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 20 2155
95 % 10 20 2799
90 % 10 20 2842
70 % 10 20 2811
50 % 10 20 2776
40 % 10 20 2734
30 % 10 20 2555
Entity #2 | Chains: B
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 15 3501
95 % 34 112 300 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.6
PDBFlex
90 % 34 112 315
70 % 34 117 333
50 % 34 117 392
40 % 34 128 356
30 % 738 1830 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.