Sequence Similarity Clusters for the Entities in PDB 1GJ8

Entity #1 | Chains: A
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 20 2175
95 % 4 20 2818
90 % 4 20 2860
70 % 4 20 2828
50 % 4 20 2790
40 % 4 20 2747
30 % 4 20 2569
Entity #2 | Chains: B
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 15 3528
95 % 20 112 301 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.6
PDBFlex
90 % 20 112 316
70 % 20 117 333
50 % 20 117 394
40 % 20 128 356
30 % 506 1831 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.