Sequence Similarity Clusters for the Entities in PDB 1GJ8

Entity #1 | Chains: A
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 20 2199
95 % 4 20 2850
90 % 4 20 2892
70 % 4 20 2859
50 % 4 20 2815
40 % 4 20 2775
30 % 4 20 2597
Entity #2 | Chains: B
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 15 3576
95 % 20 112 305 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.5
PDBFlex
90 % 20 112 323
70 % 20 117 342
50 % 20 117 399
40 % 20 128 365
30 % 506 1833 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.