Sequence Similarity Clusters for the Entities in PDB 1GJ7

Entity #1 | Chains: A
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 20 2571
95 % 1 20 2884
90 % 1 20 2944
70 % 1 20 2902
50 % 1 20 2864
40 % 1 20 2792
30 % 1 20 2583
Entity #2 | Chains: B
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 65 619
95 % 12 112 333 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.6
PDBFlex
90 % 12 112 349
70 % 12 117 368
50 % 12 117 433
40 % 368 1884 4
30 % 368 1898 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures