Sequence Similarity Clusters for the Entities in PDB 1GJ5

Entity #1 | Chains: L
THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 101 338 45
95 % 101 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 101 339 67
70 % 101 341 78
50 % 101 341 109
40 % 101 341 132
30 % 101 341 140
Entity #2 | Chains: H
THROMBIN protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 290 75
95 % 105 377 52
90 % 105 384 48
70 % 105 408 46
50 % 105 408 84
40 % 719 1863 4
30 % 721 1885 6
Entity #3 | Chains: I
ACETYL HIRUDIN protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures