Sequence Similarity Clusters for the Entities in PDB 1GJ5

Entity #1 | Chains: L
THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 98 335 45
95 % 98 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 98 336 66
70 % 98 338 78
50 % 98 338 105
40 % 98 338 128
30 % 98 338 137
Entity #2 | Chains: H
THROMBIN protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 290 57
95 % 102 374 35
90 % 102 381 39
70 % 102 405 45
50 % 102 405 81
40 % 668 1696 4
30 % 700 1846 6
Entity #3 | Chains: I
ACETYL HIRUDIN protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.