POP-OUT | CLOSE
 
CRYSTAL STRUCTURE OF THE RIBOSOME AT 5.5 A RESOLUTION. THIS FILE, 1GIY, CONTAINS THE 50S RIBOSOME SUBUNIT. THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES ARE IN THE FILE 1GIX
Sequence Clustering and Redundancy Reduction Results
1GIY
Sequence Clusters for the Sequence Entities in PDB 1GIY
Entity #1: Chains: A - 50S 23S RIBOSOMAL RNA rna, length: 2916 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: K - 50S RIBOSOMAL PROTEIN L9 protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 7 7742
95% 6 7 7953
90% 6 7 7883
70% 6 7 7546
50% 6 7 6910
40% 241 242 132
30% 241 242 152
Entity #11: Chains: L - 50S RIBOSOMAL PROTEIN L11 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 19 1804
95% 19 21 2048
90% 19 21 2077
70% 21 23 1912
50% 198 200 127
40% 201 203 151
30% 203 205 174
Entity #12: Chains: M - 50S RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 74 281
95% 74 74 398
90% 74 74 424
70% 74 74 450
50% 74 74 497
40% 77 77 501
30% 78 78 505
Entity #13: Chains: N - 50S RIBOSOMAL PROTEIN L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 9 5323
95% 7 9 5935
90% 7 9 5913
70% 9 11 4697
50% 308 310 58
40% 309 311 75
30% 441 443 48
Entity #14: Chains: O - 50S RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 74 280
95% 74 74 397
90% 74 74 423
70% 74 74 449
50% 74 74 496
40% 74 74 529
30% 435 435 53
Entity #15: Chains: P - 50S RIBOSOMAL PROTEIN L16 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 6 9954
95% 6 6 9746
90% 7 7 7870
70% 27 27 1621
50% 74 74 495
40% 78 78 488
30% 78 78 504
Entity #16: Chains: Q - 50S RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 74 278
95% 74 74 395
90% 74 74 421
70% 74 74 447
50% 76 76 479
40% 76 76 510
30% 78 78 502
Entity #17: Chains: R - 50S RIBOSOMAL PROTEIN L19 protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 70 305
95% 70 70 434
90% 70 70 455
70% 70 70 485
50% 70 70 539
40% 70 70 568
30% 70 70 569
Entity #18: Chains: S - 50S RIBOSOMAL PROTEIN L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 171 171 52
95% 172 172 87
90% 172 172 98
70% 172 172 119
50% 284 284 79
40% 284 284 103
30% 286 286 125
Entity #19: Chains: T - 50S RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 74 285
95% 74 74 400
90% 74 74 426
70% 74 74 452
50% 76 76 480
40% 78 78 492
30% 383 383 70
Entity #2: Chains: B - 50S 5S RIBOSOMAL RNA rna, length: 123 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: U - 50S RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 74 284
95% 74 74 399
90% 74 74 425
70% 74 74 451
50% 139 139 232
40% 139 139 258
30% 139 139 272
Entity #21: Chains: V - 50S RIBOSOMAL PROTEIN L25 protein, length: 94 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 113 116 132
95% 113 116 193
90% 113 116 207
70% 113 116 236
50% 113 116 281
40% 113 116 311
30% 113 116 328
Entity #22: Chains: W - 50S RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 74 286
95% 74 74 401
90% 74 74 427
70% 74 74 453
50% 74 74 498
40% 74 74 530
30% 74 74 531
Entity #23: Chains: X - 50S RIBOSOMAL PROTEIN L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 169 169 54
95% 169 169 91
90% 169 169 100
70% 169 169 122
50% 169 169 167
40% 303 303 86
30% 303 303 106
Entity #3: Chains: C - 50S RIBOSOMAL PROTEIN L1 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 13 2401
95% 90 92 299
90% 91 93 313
70% 91 93 334
50% 128 130 244
40% 128 130 270
30% 170 172 208
Entity #4: Chains: D - 50S RIBOSOMAL PROTEIN L2 protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 21095
95% 6 6 9498
90% 6 6 9376
70% 6 6 8905
50% 6 6 8041
40% 6 6 7328
30% 6 6 6480
Entity #5: Chains: E - 50S RIBOSOMAL PROTEIN L3 protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 6 8670
95% 74 74 390
90% 74 74 417
70% 74 74 444
50% 74 74 491
40% 130 130 278
30% 130 130 302
Entity #6: Chains: F - 50S RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 7 7578
95% 74 74 393
90% 74 74 419
70% 74 74 446
50% 74 74 493
40% 76 76 509
30% 77 77 508
Entity #7: Chains: G - 50S RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 74 279
95% 74 74 396
90% 74 74 422
70% 74 74 448
50% 74 74 494
40% 136 136 265
30% 136 136 287
Entity #8: Chains: H - 50S RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 10 4674
95% 7 10 5268
90% 7 10 5281
70% 9 12 4296
50% 193 196 136
40% 303 306 80
30% 429 432 55
Entity #9: Chains: I,J - 50S RIBOSOMAL PROTEIN L7/L12 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 6970
95% 4 4 7266
90% 4 4 7203
70% 4 4 6921
50% 20 20 1182
40% 20 20 1200
30% 21 21 1118
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.