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CRYSTAL STRUCTURE OF THE RIBOSOME AT 5.5 A RESOLUTION. THIS FILE, 1GIY, CONTAINS THE 50S RIBOSOME SUBUNIT. THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES ARE IN THE FILE 1GIX
Sequence Clustering and Redundancy Reduction Results
1GIY
Sequence Clusters for the Sequence Entities in PDB 1GIY
Entity #1: Chains: A - 50S 23S RIBOSOMAL RNA rna, length: 2916 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: K - 50S RIBOSOMAL PROTEIN L9 protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 7 7805
95% 6 7 8016
90% 6 7 7944
70% 6 7 7601
50% 6 7 6961
40% 244 245 133
30% 244 245 153
Entity #11: Chains: L - 50S RIBOSOMAL PROTEIN L11 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 19 1826
95% 19 21 2069
90% 19 21 2100
70% 21 23 1933
50% 202 204 122
40% 205 207 149
30% 207 209 173
Entity #12: Chains: M - 50S RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 74 284
95% 74 74 402
90% 74 74 427
70% 74 74 454
50% 74 74 499
40% 77 77 504
30% 78 78 509
Entity #13: Chains: N - 50S RIBOSOMAL PROTEIN L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 9 5370
95% 7 9 5980
90% 7 9 5961
70% 9 11 4736
50% 312 314 57
40% 313 315 76
30% 452 454 46
Entity #14: Chains: O - 50S RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 74 283
95% 74 74 401
90% 74 74 426
70% 74 74 453
50% 74 74 498
40% 74 74 535
30% 446 446 54
Entity #15: Chains: P - 50S RIBOSOMAL PROTEIN L16 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 6 10039
95% 6 6 9818
90% 7 7 7931
70% 27 27 1636
50% 74 74 497
40% 78 78 493
30% 78 78 508
Entity #16: Chains: Q - 50S RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 74 281
95% 74 74 399
90% 74 74 424
70% 74 74 451
50% 76 76 480
40% 76 76 514
30% 78 78 506
Entity #17: Chains: R - 50S RIBOSOMAL PROTEIN L19 protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 70 307
95% 70 70 438
90% 70 70 460
70% 70 70 494
50% 70 70 548
40% 70 70 583
30% 70 70 580
Entity #18: Chains: S - 50S RIBOSOMAL PROTEIN L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 171 171 53
95% 172 172 88
90% 172 172 98
70% 172 172 119
50% 288 288 79
40% 288 288 104
30% 290 290 121
Entity #19: Chains: T - 50S RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 74 287
95% 74 74 404
90% 74 74 429
70% 74 74 457
50% 76 76 482
40% 78 78 496
30% 387 387 69
Entity #2: Chains: B - 50S 5S RIBOSOMAL RNA rna, length: 123 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: U - 50S RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 74 286
95% 74 74 403
90% 74 74 428
70% 74 74 456
50% 146 146 216
40% 146 146 245
30% 146 146 263
Entity #21: Chains: V - 50S RIBOSOMAL PROTEIN L25 protein, length: 94 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 120 127
95% 117 120 186
90% 117 120 196
70% 117 120 228
50% 117 120 277
40% 117 120 307
30% 117 120 320
Entity #22: Chains: W - 50S RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 74 288
95% 74 74 405
90% 74 74 430
70% 74 74 458
50% 74 74 502
40% 74 74 538
30% 74 74 539
Entity #23: Chains: X - 50S RIBOSOMAL PROTEIN L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 171 171 52
95% 171 171 90
90% 171 171 99
70% 171 171 120
50% 171 171 168
40% 309 309 81
30% 309 309 103
Entity #3: Chains: C - 50S RIBOSOMAL PROTEIN L1 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 13 2428
95% 91 93 297
90% 92 94 311
70% 92 94 331
50% 130 132 244
40% 130 132 275
30% 172 174 204
Entity #4: Chains: D - 50S RIBOSOMAL PROTEIN L2 protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 21263
95% 6 6 9569
90% 6 6 9443
70% 6 6 8966
50% 6 6 8097
40% 6 6 7379
30% 6 6 6522
Entity #5: Chains: E - 50S RIBOSOMAL PROTEIN L3 protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 6 8748
95% 74 74 394
90% 74 74 420
70% 74 74 448
50% 74 74 493
40% 143 143 251
30% 143 143 266
Entity #6: Chains: F - 50S RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 7 7640
95% 74 74 397
90% 74 74 422
70% 74 74 450
50% 74 74 495
40% 76 76 513
30% 77 77 512
Entity #7: Chains: G - 50S RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 74 282
95% 74 74 400
90% 74 74 425
70% 74 74 452
50% 74 74 496
40% 143 143 252
30% 143 143 268
Entity #8: Chains: H - 50S RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 10 4716
95% 7 10 5309
90% 7 10 5322
70% 9 12 4331
50% 193 196 140
40% 307 310 80
30% 446 449 51
Entity #9: Chains: I,J - 50S RIBOSOMAL PROTEIN L7/L12 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 7022
95% 4 4 7325
90% 4 4 7264
70% 4 4 6978
50% 20 20 1193
40% 20 20 1212
30% 21 21 1130
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.