POP-OUT | CLOSE
 
Crystal structure of the ribosome at 5.5 A resolution. This file, 1GIX, contains the 30S ribosome subunit, three tRNA, and mRNA molecules. 50S ribosome subunit is in the file 1GIY
Sequence Clustering and Redundancy Reduction Results
1GIX
Sequence Clusters for the Sequence Entities in PDB 1GIX
Entity #1: Chains: A - 30S 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 256 259 20
95% 257 260 37
90% 257 260 39
70% 257 260 51
50% 305 308 57
40% 306 309 74
30% 306 309 97
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 252 255 23
95% 252 255 41
90% 256 259 40
70% 256 259 52
50% 366 369 36
40% 368 371 49
30% 405 408 50
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 113 113 134
95% 255 255 45
90% 255 255 48
70% 255 255 60
50% 363 363 41
40% 363 363 57
30% 399 399 60
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 252 252 29
95% 254 254 48
90% 254 254 51
70% 254 254 63
50% 369 369 35
40% 369 369 48
30% 374 374 67
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 255 255 27
95% 255 255 44
90% 255 255 47
70% 255 255 59
50% 363 363 42
40% 403 403 39
30% 403 403 53
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 224 224 37
95% 262 262 36
90% 262 262 38
70% 375 375 25
50% 375 375 34
40% 375 375 47
30% 375 375 71
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 256 256 24
95% 256 256 42
90% 256 256 45
70% 256 256 57
50% 365 365 39
40% 365 365 54
30% 401 401 57
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 254 254 28
95% 254 254 49
90% 254 254 52
70% 254 254 64
50% 254 254 99
40% 254 254 124
30% 254 254 144
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 256 258 22
95% 261 263 35
90% 261 263 37
70% 261 263 48
50% 373 376 32
40% 373 376 45
30% 373 376 69
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S16 protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 5 11656
95% 254 255 46
90% 254 255 49
70% 254 255 61
50% 254 255 97
40% 254 255 122
30% 362 363 78
Entity #2: Chains: B,C - TRNA(PHE) rna, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 92 220
95% 249 249 51
90% 253 253 53
70% 253 253 65
50% 253 253 100
40% 253 253 126
30% 253 253 146
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 49 463
95% 221 221 64
90% 221 221 68
70% 221 221 81
50% 221 221 116
40% 221 221 144
30% 221 221 166
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 221 223 38
95% 221 223 63
90% 221 223 67
70% 221 223 80
50% 364 366 38
40% 364 366 53
30% 364 366 75
Entity #23: Chains: W - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 61 360
95% 254 254 47
90% 254 254 50
70% 254 254 62
50% 254 254 98
40% 254 254 123
30% 254 254 143
Entity #24: Chains: X - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 238 238 34
95% 238 238 55
90% 238 238 59
70% 238 238 71
50% 238 238 110
40% 238 238 133
30% 238 238 153
Entity #3: Chains: D - TRNA(PHE) rna, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: 1 - A- AND P-SITE MESSENGER RNA CODONS rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 255 255 25
95% 256 256 39
90% 256 256 43
70% 256 256 55
50% 256 256 96
40% 363 363 56
30% 363 363 77
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 219 219 39
95% 219 219 66
90% 219 219 70
70% 219 219 83
50% 282 282 81
40% 282 282 102
30% 282 282 124
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 8 6549
95% 256 256 40
90% 256 256 44
70% 256 256 56
50% 363 363 40
40% 364 364 55
30% 364 364 76
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 255 255 26
95% 255 255 43
90% 255 255 46
70% 255 255 58
50% 364 367 37
40% 364 367 52
30% 366 369 73
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 258 260 18
95% 264 266 34
90% 264 266 36
70% 264 266 47
50% 264 266 88
40% 264 266 112
30% 311 313 95
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.