Sequence Similarity Clusters for the Entities in PDB 1GIG

Entity #1 | Chains: L
IGG1-KAPPA HC19 FAB (LIGHT CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 13200
95 % 11 39 491 Flexibility: Low
Max RMSD: 8.7, Avg RMSD: 2.3
PDBFlex
90 % 13 45 440
70 % 905 2416 1
50 % 1850 4892 1
40 % 1850 4892 1
30 % 2085 5759 1
Entity #2 | Chains: H
IGG1-KAPPA HC19 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 21517
95 % 1 4 18701 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.5
PDBFlex
90 % 4 11 5914
70 % 892 2366 2
50 % 1851 4892 1
40 % 1851 4892 1
30 % 2086 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures