Sequence Similarity Clusters for the Entities in PDB 1GIG

Entity #1 | Chains: L
IGG1-KAPPA HC19 FAB (LIGHT CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 13431
95 % 11 39 502 Flexibility: Low
Max RMSD: 8.7, Avg RMSD: 2.3
PDBFlex
90 % 13 45 458
70 % 934 2474 1
50 % 1909 5011 1
40 % 1909 5011 1
30 % 2183 5941 1
Entity #2 | Chains: H
IGG1-KAPPA HC19 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 21862
95 % 1 4 18982 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.5
PDBFlex
90 % 4 11 6011
70 % 921 2424 2
50 % 1910 5011 1
40 % 1910 5011 1
30 % 2184 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures