Sequence Similarity Clusters for the Entities in PDB 1GIG

Entity #1 | Chains: L
IGG1-KAPPA HC19 FAB (LIGHT CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 12936
95 % 11 39 456 Flexibility: Low
Max RMSD: 8.7, Avg RMSD: 2.3
PDBFlex
90 % 13 45 396
70 % 864 2329 1
50 % 1767 4717 1
40 % 1767 4717 1
30 % 1993 5571 1
Entity #2 | Chains: H
IGG1-KAPPA HC19 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 21035
95 % 1 4 18334 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.5
PDBFlex
90 % 3 9 7745
70 % 852 2282 2
50 % 1768 4717 1
40 % 1768 4717 1
30 % 1994 5571 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.