Sequence Similarity Clusters for the Entities in PDB 1GI9

Entity #1 | Chains: A
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 20 2275
95 % 13 20 2917
90 % 13 20 2957
70 % 13 20 2922
50 % 13 20 2880
40 % 13 20 2829
30 % 13 20 2649
Entity #2 | Chains: B
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 15 3674
95 % 41 112 320 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.6
PDBFlex
90 % 41 112 337
70 % 41 117 361
50 % 41 117 419
40 % 41 128 393
30 % 850 1853 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures