Sequence Similarity Clusters for the Entities in PDB 1GI9

Entity #1 | Chains: A
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 20 2558
95 % 13 20 2874
90 % 13 20 2933
70 % 13 20 2893
50 % 13 20 2856
40 % 13 20 2779
30 % 13 20 2574
Entity #2 | Chains: B
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 27 1854
95 % 41 112 332 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.6
PDBFlex
90 % 41 112 348
70 % 41 117 368
50 % 41 117 432
40 % 864 1873 4
30 % 868 1887 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures