Sequence Similarity Clusters for the Entities in PDB 1GI8

Entity #1 | Chains: A
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2205
95 % 12 20 2857
90 % 12 20 2898
70 % 12 20 2865
50 % 12 20 2824
40 % 12 20 2785
30 % 12 20 2604
Entity #2 | Chains: B
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 15 3582
95 % 38 112 305 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 38 112 323
70 % 38 117 344
50 % 38 117 401
40 % 38 128 365
30 % 787 1834 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.