Sequence Similarity Clusters for the Entities in PDB 1GI8

Entity #1 | Chains: A
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2666
95 % 12 20 2985
90 % 12 20 3046
70 % 12 20 3006
50 % 12 20 2951
40 % 12 20 2876
30 % 12 20 2662
Entity #2 | Chains: B
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 27 1940
95 % 42 119 320 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.5
PDBFlex
90 % 42 119 332
70 % 42 124 356
50 % 42 124 429
40 % 821 1898 4
30 % 825 1912 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures