Sequence Similarity Clusters for the Entities in PDB 1GI8

Entity #1 | Chains: A
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2734
95 % 12 20 3057
90 % 12 20 3115
70 % 12 20 3075
50 % 12 20 3009
40 % 12 20 2921
30 % 12 20 2704
Entity #2 | Chains: B
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 28 1894
95 % 47 129 300 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.5
PDBFlex
90 % 47 129 310
70 % 47 134 343
50 % 47 134 416
40 % 830 1912 4
30 % 834 1926 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures