Sequence Similarity Clusters for the Entities in PDB 1GI7

Entity #1 | Chains: A
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 20 2236
95 % 11 20 2884
90 % 11 20 2926
70 % 11 20 2889
50 % 11 20 2842
40 % 11 20 2799
30 % 11 20 2620
Entity #2 | Chains: B
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 15 3625
95 % 35 112 311 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.6
PDBFlex
90 % 35 112 329
70 % 35 117 350
50 % 35 117 406
40 % 35 128 368
30 % 770 1845 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.