Sequence Similarity Clusters for the Entities in PDB 1GHW

Entity #1 | Chains: L
THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 106 334 53
95 % 107 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 107 342 67
70 % 107 342 81
50 % 107 342 112
40 % 107 342 135
30 % 107 342 146
Entity #2 | Chains: H
THROMBIN protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 103 332 52
95 % 111 378 53 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 111 385 56
70 % 111 409 47
50 % 111 409 85
40 % 775 1885 4
30 % 778 1899 7
Entity #3 | Chains: I
ACETYL HIRUDIN protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures