Sequence Similarity Clusters for the Entities in PDB 1GHQ

Entity #1 | Chains: A
COMPLEMENT C3 protein, length: 308 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 16 1277
95 % 5 16 1713 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.9
PDBFlex
90 % 5 16 1752
70 % 7 18 1465
50 % 7 18 1523
40 % 7 18 1538
30 % 7 18 1514
Entity #2 | Chains: B,C
CR2/CD121/C3D/EPSTEIN-BARR VIRUS RECEPTOR protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23083
95 % 2 5 10689 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 2 5 10543
70 % 2 5 10018
50 % 2 5 9073
40 % 2 5 8305
30 % 7 48 664

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.