Sequence Similarity Clusters for the Entities in PDB 1GHQ

Entity #1 | Chains: A
COMPLEMENT C3 protein, length: 308 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 16 1228
95 % 5 16 1661 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.9
PDBFlex
90 % 5 16 1697
70 % 7 18 1421
50 % 7 18 1475
40 % 7 18 1497
30 % 7 18 1476
Entity #2 | Chains: B,C
CR2/CD121/C3D/EPSTEIN-BARR VIRUS RECEPTOR protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22352
95 % 2 5 10358 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 2 5 10220
70 % 2 5 9698
50 % 2 5 8796
40 % 2 5 8062
30 % 7 48 646

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.