Sequence Similarity Clusters for the Entities in PDB 1GHQ

Entity #1 | Chains: A
COMPLEMENT C3 protein, length: 308 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 17 1173
95 % 5 17 1576 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.9
PDBFlex
90 % 5 17 1610
70 % 7 19 1387
50 % 7 19 1437
40 % 7 19 1447
30 % 7 19 1422
Entity #2 | Chains: B,C
CR2/CD121/C3D/EPSTEIN-BARR VIRUS RECEPTOR protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23456
95 % 2 5 10834 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 2 5 10684
70 % 2 5 10159
50 % 2 5 9203
40 % 2 5 8421
30 % 7 49 641

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures