Sequence Similarity Clusters for the Entities in PDB 1GHF

Entity #1 | Chains: L
ANTI-ANTI-IDIOTYPE GH1002 FAB FRAGMENT protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60972
95 % 29 53 570 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 37 67 373
70 % 1437 2327 1
50 % 2920 4713 1
40 % 2920 4713 1
30 % 3393 5567 1
Entity #2 | Chains: H
ANTI-ANTI-IDIOTYPE GH1002 FAB FRAGMENT protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60922
95 % 1 1 42604
90 % 1 1 40505
70 % 1411 2280 2
50 % 2921 4713 1
40 % 2921 4713 1
30 % 3394 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.