Sequence Similarity Clusters for the Entities in PDB 1GHF

Entity #1 | Chains: L
ANTI-ANTI-IDIOTYPE GH1002 FAB FRAGMENT protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59299
95 % 28 52 554 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 36 66 372
70 % 1153 1841 2
50 % 2825 4537 1
40 % 2825 4537 1
30 % 3272 5342 1
Entity #2 | Chains: H
ANTI-ANTI-IDIOTYPE GH1002 FAB FRAGMENT protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59255
95 % 1 1 41416
90 % 1 1 39419
70 % 1367 2197 1
50 % 2826 4537 1
40 % 2826 4537 1
30 % 3273 5342 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.