Sequence Similarity Clusters for the Entities in PDB 1GHF

Entity #1 | Chains: L
ANTI-ANTI-IDIOTYPE GH1002 FAB FRAGMENT protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62988
95 % 30 54 579 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 38 68 398
70 % 1540 2474 1
50 % 3128 5011 1
40 % 3128 5011 1
30 % 3665 5941 1
Entity #2 | Chains: H
ANTI-ANTI-IDIOTYPE GH1002 FAB FRAGMENT protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62936
95 % 1 1 43948
90 % 1 1 41720
70 % 1511 2424 2
50 % 3129 5011 1
40 % 3129 5011 1
30 % 3666 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures