Sequence Similarity Clusters for the Entities in PDB 1GHF

Entity #1 | Chains: L
ANTI-ANTI-IDIOTYPE GH1002 FAB FRAGMENT protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66352
95 % 30 54 584 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 38 68 401
70 % 1578 2553 1
50 % 3213 5180 1
40 % 3651 5834 1
30 % 4513 7269 1
Entity #2 | Chains: H
ANTI-ANTI-IDIOTYPE GH1002 FAB FRAGMENT protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63769
95 % 1 1 51797
90 % 1 1 49107
70 % 1552 2511 2
50 % 3214 5180 1
40 % 3652 5834 1
30 % 4514 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures