Sequence Similarity Clusters for the Entities in PDB 1GHF

Entity #1 | Chains: L
ANTI-ANTI-IDIOTYPE GH1002 FAB FRAGMENT protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61833
95 % 30 54 569 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 38 68 377
70 % 1487 2392 1
50 % 3020 4843 1
40 % 3020 4843 1
30 % 3500 5705 1
Entity #2 | Chains: H
ANTI-ANTI-IDIOTYPE GH1002 FAB FRAGMENT protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61782
95 % 1 1 43185
90 % 1 1 41031
70 % 1458 2342 2
50 % 3021 4843 1
40 % 3021 4843 1
30 % 3501 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures