Sequence Similarity Clusters for the Entities in PDB 1GHD

Entity #1 | Chains: A
GLUTARYL-7-AMINOCEPHALOSPORANIC ACID ACYLASE protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 9478
95 % 11 13 4237 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 11 13 4266
70 % 11 13 4197
50 % 11 13 4039
40 % 11 13 3863
30 % 11 13 3598
Entity #2 | Chains: B
GLUTARYL-7-AMINOCEPHALOSPORANIC ACID ACYLASE protein, length: 522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7887
95 % 11 13 3938 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 11 13 3979
70 % 11 13 3933
50 % 11 13 3823
40 % 11 13 3672
30 % 11 13 3433

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures