Sequence Similarity Clusters for the Entities in PDB 1GHB

Entity #1 | Chains: E
GAMMA-CHYMOTRYPSIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
GAMMA-CHYMOTRYPSIN protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 38 819
95 % 16 38 1121 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 16 38 1145
70 % 16 40 1139
50 % 16 40 1179
40 % 17 42 1145
30 % 18 50 981
Entity #3 | Chains: G
GAMMA-CHYMOTRYPSIN protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 38 820
95 % 16 38 1122 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.4
PDBFlex
90 % 16 38 1147
70 % 16 40 1142
50 % 18 43 1112
40 % 19 52 978
30 % 19 52 951
Entity #4 | Chains: P
PRO-GLY-ALA protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.