Sequence Similarity Clusters for the Entities in PDB 1GHA

Entity #1 | Chains: E
GAMMA-CHYMOTRYPSIN A protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
GAMMA-CHYMOTRYPSIN A protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 38 818
95 % 24 38 1119 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 24 38 1142
70 % 24 40 1137
50 % 24 40 1178
40 % 25 42 1143
30 % 26 50 974
Entity #3 | Chains: G
GAMMA-CHYMOTRYPSIN A protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 38 819
95 % 24 38 1120 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.4
PDBFlex
90 % 24 38 1144
70 % 24 40 1140
50 % 26 43 1111
40 % 27 52 977
30 % 27 52 948
Entity #4 | Chains: P
PRO GLY VAL TYR PEPTIDE protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.