Sequence Similarity Clusters for the Entities in PDB 1GH6

Entity #1 | Chains: A
Large T antigen protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64604
95 % 1 1 52434
90 % 1 1 49708
70 % 1 1 43472
50 % 1 1 36884
40 % 1 1 32275
30 % 1 1 26984
Entity #2 | Chains: B
Retinoblastoma-associated protein protein, length: 333 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46868
95 % 4 4 10609 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 4 4 10462
70 % 5 5 7583
50 % 5 5 6963
40 % 5 5 6437
30 % 8 8 4375

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures