Sequence Similarity Clusters for the Entities in PDB 1GH6

Entity #1 | Chains: A
Large T antigen protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65945
95 % 1 1 45398
90 % 1 1 43114
70 % 1 1 37927
50 % 1 1 32387
40 % 1 1 28625
30 % 1 1 24215
Entity #2 | Chains: B
Retinoblastoma-associated protein protein, length: 333 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53177
95 % 4 4 9863 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 4 4 9752
70 % 4 4 9268
50 % 4 4 8419
40 % 4 4 7721
30 % 7 7 4963

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.