Sequence Similarity Clusters for the Entities in PDB 1GH6

Entity #1 | Chains: A
Large T antigen protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66640
95 % 1 1 45891
90 % 1 1 43559
70 % 1 1 38318
50 % 1 1 32707
40 % 1 1 28898
30 % 1 1 24451
Entity #2 | Chains: B
Retinoblastoma-associated protein protein, length: 333 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53797
95 % 4 4 9999 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 4 4 9890
70 % 4 4 9389
50 % 4 4 8523
40 % 4 4 7814
30 % 7 7 5011

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.