Sequence Similarity Clusters for the Entities in PDB 1GH6

Entity #1 | Chains: A
Large T antigen protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70434
95 % 1 1 48465
90 % 1 1 45901
70 % 1 1 40191
50 % 1 1 34204
40 % 1 1 30191
30 % 1 1 25535
Entity #2 | Chains: B
Retinoblastoma-associated protein protein, length: 333 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56858
95 % 4 4 10630 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.2
PDBFlex
90 % 4 4 10505
70 % 4 4 9963
50 % 4 4 9024
40 % 4 4 8262
30 % 7 7 5320

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures