Sequence Similarity Clusters for the Entities in PDB 1GH6

Entity #1 | Chains: A
Large T antigen protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69458
95 % 1 1 47822
90 % 1 1 45314
70 % 1 1 39700
50 % 1 1 33794
40 % 1 1 29823
30 % 1 1 25223
Entity #2 | Chains: B
Retinoblastoma-associated protein protein, length: 333 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56046
95 % 4 4 10425 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.2
PDBFlex
90 % 4 4 10301
70 % 4 4 9781
50 % 4 4 8868
40 % 4 4 8124
30 % 7 7 5228

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures