Sequence Similarity Clusters for the Entities in PDB 1GH0

Entity #1 | Chains: A,C,E,G,I,K,M,O,Q,S,U,W
C-PHYCOCYANIN ALPHA SUBUNIT protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 1445
95 % 1 4 1270 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 7 784
70 % 16 36 292
50 % 16 42 291
40 % 25 54 63
30 % 58 143 18
Entity #2 | Chains: B,D,F,H,J,L,N,P,R,T,V,X
C-PHYCOCYANIN BETA SUBUNIT protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 5340
95 % 1 10 752 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 10 783
70 % 16 39 291
50 % 31 62 39
40 % 33 87 28
30 % 59 143 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures