Sequence Similarity Clusters for the Entities in PDB 1GH0

Entity #1 | Chains: A,C,E,G,I,K,M,O,Q,S,U,W
C-PHYCOCYANIN ALPHA SUBUNIT protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 1712
95 % 1 4 1318 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 7 808
70 % 16 36 297
50 % 16 42 301
40 % 25 54 85
30 % 58 143 15
Entity #2 | Chains: B,D,F,H,J,L,N,P,R,T,V,X
C-PHYCOCYANIN BETA SUBUNIT protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 1711
95 % 1 10 779 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 10 802
70 % 16 39 296
50 % 31 62 40
40 % 33 87 34
30 % 59 143 15

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures