Sequence Similarity Clusters for the Entities in PDB 1GH0

Entity #1 | Chains: A,C,E,G,I,K,M,O,Q,S,U,W
C-PHYCOCYANIN ALPHA SUBUNIT protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 1406
95 % 1 4 1240 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 7 766
70 % 14 31 378
50 % 14 37 409
40 % 23 48 253
30 % 54 128 115
Entity #2 | Chains: B,D,F,H,J,L,N,P,R,T,V,X
C-PHYCOCYANIN BETA SUBUNIT protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 5198
95 % 1 10 733 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 10 765
70 % 14 34 377
50 % 29 56 211
40 % 31 78 186
30 % 55 128 115

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.