Sequence Similarity Clusters for the Entities in PDB 1GGY

Entity #1 | Chains: A,B
PROTEIN (COAGULATION FACTOR XIII) protein, length: 731 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 5963
95 % 8 9 3382 Flexibility: Medium
Max RMSD: 20.2, Avg RMSD: 5.2
PDBFlex
90 % 8 9 3437
70 % 8 9 3403
50 % 8 9 3313
40 % 8 9 3218
30 % 12 22 1265

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures