Sequence Similarity Clusters for the Entities in PDB 1GGL

Entity #1 | Chains: A,B
PROTEIN (CELLULAR RETINOL-BINDING PROTEIN III) protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32730
95 % 1 1 28240 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 27140
70 % 1 1 24498
50 % 47 54 535
40 % 176 211 153
30 % 220 294 131

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures