Sequence Similarity Clusters for the Entities in PDB 1GGI

Entity #1 | Chains: L,M
IGG2A 50.1 FAB (LIGHT CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 24492
95 % 22 40 785 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 44 108 147
70 % 1488 2538 1
50 % 3038 5152 1
40 % 3461 5806 1
30 % 4263 7240 1
Entity #2 | Chains: H,J
IGG2A 50.1 FAB (HEAVY CHAIN) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43076
95 % 1 3 19611 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 15 18 2897
70 % 1467 2497 2
50 % 3039 5152 1
40 % 3462 5806 1
30 % 4264 7240 1
Entity #3 | Chains: P,Q
HIV-1 V3 LOOP PEPTIDE ANTIGEN protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures