Sequence Similarity Clusters for the Entities in PDB 1GGI

Entity #1 | Chains: L,M
IGG2A 50.1 FAB (LIGHT CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 21981
95 % 22 40 777 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 44 105 152
70 % 1462 2474 1
50 % 2977 5011 1
40 % 2977 5011 1
30 % 3464 5941 1
Entity #2 | Chains: H,J
IGG2A 50.1 FAB (HEAVY CHAIN) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41463
95 % 1 3 18956 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 11 13 3946
70 % 1438 2424 2
50 % 2978 5011 1
40 % 2978 5011 1
30 % 3465 5941 1
Entity #3 | Chains: P,Q
HIV-1 V3 LOOP PEPTIDE ANTIGEN protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures