Sequence Similarity Clusters for the Entities in PDB 1GGI

Entity #1 | Chains: L,M
IGG2A 50.1 FAB (LIGHT CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 20972
95 % 21 39 763 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.5
PDBFlex
90 % 40 99 152
70 % 1337 2287 1
50 % 2725 4633 1
40 % 2725 4633 1
30 % 3142 5461 1
Entity #2 | Chains: H,J
IGG2A 50.1 FAB (HEAVY CHAIN) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39792
95 % 1 3 18172 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 11 13 3761
70 % 1319 2244 2
50 % 2726 4633 1
40 % 2726 4633 1
30 % 3143 5461 1
Entity #3 | Chains: P,Q
HIV-1 V3 LOOP PEPTIDE ANTIGEN protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.