Sequence Similarity Clusters for the Entities in PDB 1GGI

Entity #1 | Chains: L,M
IGG2A 50.1 FAB (LIGHT CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 19240
95 % 16 34 846
90 % 31 74 265
70 % 1024 1704 2
50 % 2487 4154 1
40 % 2487 4155 1
30 % 2852 4901 1
Entity #2 | Chains: H,J
IGG2A 50.1 FAB (HEAVY CHAIN) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 36662
95 % 1 3 16682
90 % 11 13 3476
70 % 1204 2010 1
50 % 2488 4154 1
40 % 2488 4155 1
30 % 2853 4901 1
Entity #3 | Chains: P,Q
HIV-1 V3 LOOP PEPTIDE ANTIGEN protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.