Sequence Similarity Clusters for the Entities in PDB 1GGD

Entity #1 | Chains: A
GAMMA CHYMOTRYPSIN protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
GAMMA CHYMOTRYPSIN protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 38 994
95 % 3 38 1201 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 3 38 1225
70 % 3 40 1210
50 % 3 40 1251
40 % 3 45 1154
30 % 3 53 984
Entity #3 | Chains: C
GAMMA CHYMOTRYPSIN protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 38 1007
95 % 3 38 1219 Flexibility: No
Max RMSD: 1.5, Avg RMSD: 0.4
PDBFlex
90 % 3 38 1241
70 % 3 40 1220
50 % 3 46 1128
40 % 3 55 958
30 % 3 55 952

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures