Sequence Similarity Clusters for the Entities in PDB 1GGD

Entity #1 | Chains: A
GAMMA CHYMOTRYPSIN protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
GAMMA CHYMOTRYPSIN protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 38 864
95 % 3 38 1181 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 3 38 1204
70 % 3 40 1187
50 % 3 40 1234
40 % 3 45 1132
30 % 3 53 971
Entity #3 | Chains: C
GAMMA CHYMOTRYPSIN protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 38 865
95 % 3 38 1182 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 3 38 1205
70 % 3 40 1190
50 % 3 46 1104
40 % 3 55 968
30 % 3 55 949

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures