Sequence Similarity Clusters for the Entities in PDB 1GGC

Entity #1 | Chains: L
IGG2A-KAPPA 50.1 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 20972
95 % 22 39 763
90 % 41 99 152
70 % 1351 2287 1
50 % 2752 4633 1
40 % 2752 4633 1
30 % 3175 5461 1
Entity #2 | Chains: H
IGG2A-KAPPA 50.1 FAB (HEAVY CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40449
95 % 2 3 18172 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 12 13 3761
70 % 1332 2244 2
50 % 2753 4633 1
40 % 2753 4633 1
30 % 3176 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.