Sequence Similarity Clusters for the Entities in PDB 1GGC

Entity #1 | Chains: L
IGG2A-KAPPA 50.1 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 20647
95 % 22 39 761 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.5
PDBFlex
90 % 40 98 151
70 % 1340 2264 1
50 % 2731 4587 1
40 % 2731 4587 1
30 % 3143 5394 1
Entity #2 | Chains: H
IGG2A-KAPPA 50.1 FAB (HEAVY CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 39865
95 % 2 3 17879
90 % 12 13 3726
70 % 1322 2222 2
50 % 2732 4587 1
40 % 2732 4587 1
30 % 3144 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.