Sequence Similarity Clusters for the Entities in PDB 1GGC

Entity #1 | Chains: L
IGG2A-KAPPA 50.1 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 21479
95 % 22 39 786
90 % 42 101 157
70 % 1424 2392 1
50 % 2898 4843 1
40 % 2898 4843 1
30 % 3338 5705 1
Entity #2 | Chains: H
IGG2A-KAPPA 50.1 FAB (HEAVY CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 41335
95 % 2 3 18564
90 % 12 13 3855
70 % 1399 2342 2
50 % 2899 4843 1
40 % 2899 4843 1
30 % 3339 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures