Sequence Similarity Clusters for the Entities in PDB 1GGB

Entity #1 | Chains: L
IGG2A-KAPPA 50.1 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 21144
95 % 23 39 769 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 49 99 156
70 % 1469 2329 1
50 % 2982 4717 1
40 % 2982 4717 1
30 % 3466 5571 1
Entity #2 | Chains: H
IGG2A-KAPPA 50.1 FAB (HEAVY CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40752
95 % 3 3 18309 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 13 13 3798
70 % 1440 2282 2
50 % 2983 4717 1
40 % 2983 4717 1
30 % 3467 5571 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.