Sequence Similarity Clusters for the Entities in PDB 1GGB

Entity #1 | Chains: L
IGG2A-KAPPA 50.1 FAB (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 21666
95 % 24 40 772 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 1.4
PDBFlex
90 % 52 103 153
70 % 1539 2426 1
50 % 3123 4913 1
40 % 3123 4913 1
30 % 3617 5780 1
Entity #2 | Chains: H
IGG2A-KAPPA 50.1 FAB (HEAVY CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41645
95 % 3 3 18706 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 13 13 3894
70 % 1507 2376 2
50 % 3124 4913 1
40 % 3124 4913 1
30 % 3618 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures